Download these free tools to facilitate your experimental design,
data analysis, and data management. For more information, click the
names of the software listed below. To find updates and patches for
software for specific Applied Biosystems instruments, go to Software Downloads.
| Application |
Software |
Description |
Instrument Compatibility |
Download |
| DNA Methylation Analysis |
Methyl Primer Express® Software v1.0 |
Design methylation-specific primers (MSP) and bisulfite sequencing primers (BSP).
|
Genetic Analyzers |
Download |
| qPCR Protein expression analysis |
TaqMan® Protein Expression Data Analysis Software v1.0 (beta1) |
Import Ct files exported from real-time systems to view and analyze protein expression assay data for relative quantitation
|
Real-time PCR Systems |
Download |
| DNA Sequencing |
Sequence Scanner Software v1.0 |
View, edit, print and export sequence data generated using the Applied Biosystems Genetic Analyzers. |
Genetic Analyzers |
Download |
| DNA Sequencing |
Color Space Mapping Tool |
Enables you to map SOLiD color space reads to whole human genomes. Available as source code. |
SOLiD™ Analyzer |
Download |
| DNA Sequencing |
SOLiD™ System Analysis Pipeline Tool |
Allows you to map color space reads to large or small genomes, to place and annotate paired reads, and to call SNPs. Available as source code. |
SOLiD™ Analyzer |
Download |
| DNA Sequencing |
SOLiD™ Alignment Browser |
A genome annotation viewer and editor which is based on the Apollo Genome Annotation Curation Tool. |
SOLiD™ Analyzer |
Download |
| DNA Sequencing |
Small RNA Analysis Pipeline Tool |
A small RNA SOLiD™ System Analysis Pipeline for human whole genome alignment of small RNA sequencing data with tag counting features. Available as source code. |
SOLiD™ Analyzer |
Download |
| DNA Sequencing |
General Feature Format (GFF) Conversion Tool |
Enables you to consolidate reference-aligned SOLiD™ data into a standard format (General Feature Format). Available as source code. |
SOLiD™ Analyzer |
Download |
| DNA Sequencing |
Sequence Read Format Conversion Tool |
Enables you to convert native SOLiD™ data into a community-driven standard (Short Read Format) for NCBI submission. Available as source code. |
SOLiD™ Analyzer |
Download |
| Fragment Analysis |
Peak Scanner™ Software v1.0
|
The free Peak Scanner™ Software performs DNA fragment analysis, which separates a mixture of DNA fragments according to their sizes, provides a profile of the separation, and precisely calculates the sizes of the fragments. The software allows you to view, edit, analyze, print, and export fragment analysis data generated using the Applied Biosystems Genetic Analyzers.
|
3100 Genetic Analyzer
3100-Avant™ Genetic Analyzer
3130 and 3130xl Genetic Analyzer
3730 and 3730xl DNA Analyzer
|
Download |
| SNP Genotyping |
SNPbrowser™ Software v4.0 |
Select optimal sets of SNPs for association and fine mapping studies by visualizing SNPs in their genomic context using linkage disequilibrium maps and putative haplotype blocks. |
Genetic Analyzers, Real-Time PCR Instruments |
Download |
| SNP Genotyping |
Mouse SNPbrowser™ Software |
Enables efficient and easy selection of mouse SNP sets to discriminate between strains of interest, with specific applications in genotype/phenotype mapping and strain variation. |
Genetic Analyzers, Real-Time PCR Instruments |
Download |
| SNP Genotyping |
AutoCaller™ Software v1.1 |
Streamlines medium- and high-throughput genotyping bottlenecks. Automatically reads SDS, *.xml, text, EDS, and OpenArray™ SNP Genotyping Analysis software files and performs genotyping analysis. Genotypes falling within user-defined criteria are
flagged for review. Includes user-configurable display settings and reporting. |
Applied Biosystems Real-Time PCR Systems (excluding 7300 System), and TaqMan® OpenArray™ Genotyping System. |
Download |
NOTICE TO USER | TERMS AND CONDITIONS | DISCLAIMERS
The Applied Biosystems resources provided here are all unsupported software development
tools. They are not validated products and are provided "as is" and without warranty. Without
limiting the foregoing, your use of such resources is subject to any applicable license or
terms of use. Comments regarding this site and Applied Biosystems resources provided herein
should be submitted to software.community
@appliedbiosystems.com.
Please do not call Applied Biosystems Customer/Technical Support.
Links to third-party Web sites and any resources or products that they may provide
are intended for convenience only and do not imply endorsement or approval by Applied
Biosystems and we neither support nor make any warranty for such resources. Applied
Biosystems is not responsible for their contents. All queries and end-user support
requests regarding third-party resources and products should be addressed to the relevant
third party. Applied Biosystems is not responsible for providing any end-user support.
The use of all the resources provided herein and any associated materials is at user's
own risk, without recourse to Applied Biosystems. Your use of any resources provided herein,
including the software tools, is conditioned on your acceptance of the above terms,
including the applicable license terms, if any, and your use of any of the resources herein
indicate your understanding and acceptance of these terms.
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